A total of 56,530 AS events were identified from three radish genotypes with intron retention (IR) being the most frequent AS type, which accounted for 59.4% of the total expressed genes in radish. In this study, three radish transcriptome datasets were collected and aligned to the reference radish genome. ![]() So far, however, little information is available on utilization of AS events and development of SNP and InDel markers from transcriptome in radish. Single nucleotide polymorphism (SNP) and insertion/deletion (InDel) are abundant polymorphisms and co-dominant inheritance markers, which have been widely used in germplasm identification, genetic mapping and marker-assisted selection in plants. Alternative splicing (AS) plays important roles in gene expression and proteome diversity.
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